species:   Scscl
pid:       PID1717
parent:    Ssc-milR-193
paralog:   
locus:     NW_001820833.1:558583-558673
matures:   ['CUUGCAAGAUACGGUCGGCCUUA', 'AUGCGAAACGGUGCACAAGUC']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820833.1:558583-558673

0 out of bounds
39 alignments
25 proper strand
20 stranded perfect matches

         ***********************                          *********************            
UACAGCAAAGCUUGCAAGAUACGGUCGGCCUUAUUGUGUAGGAGAGAUCCGGCAAGGUAAUGCGAAACGGUGCACAAGUCGCGAGGUGUAG
((((.(...(((((...(.(((.((..((.(((((.(((.(((....))).))).))))).))...)).)))).))))).....).)))).
----------CUUGCAAGAUACGGUCGGCCUUA---------------------------------------------------------- l=23 a=0 c
-----------------------------------------------------------AUGCGAAACGGUGCACAAGUC----------- l=21 a=0 c*
-----------UUGCAAGAUACGGUCGGCCUU----------------------------------------------------------- l=21 a=7 ma
------------------------------------------------------------UGCGAAACGGUGCACAAGU------------ l=19 a=0 ma*

--------------------------------------UAGGAGAGAUCCGGCAAGGUA-------------------------------- l=21 a=2 
--------------------------------------UAGGAGAGAUCCGGCAAGGUAA------------------------------- l=22 a=3 
--------------------------------------UAGGAGAGAUCCGGCAAGGUAAU------------------------------ l=23 a=1 
----------------------------------UGUGUAGGAGAGAUCCGGCAAG----------------------------------- l=22 a=2 
---------------------------------UUGUGUAGGAGAGAUCCGGCAA------------------------------------ l=22 a=1 
---------------------------------UcGUGUAGGAGAGAUCCGGCAAGG---------------------------------- l=24 a=1 
------------UGCAAGAUACGGUCGGCC------------------------------------------------------------- l=18 a=1 
------------UGCAAGAUACGGUCGGCCU------------------------------------------------------------ l=19 a=1 
------------UGCAAGAUACGGUCGGCCUaA---------------------------------------------------------- l=21 a=1 
-----------UUGCAAGAUACGGUCGGCCUU----------------------------------------------------------- l=21 a=7 (ma)
-----------UUGCAAGAUACGGUCGGCCaU----------------------------------------------------------- l=21 a=1 
----------CUUGCAAGAUACGGUCGGCCU------------------------------------------------------------ l=21 a=1 
----------CUUGCAAGAUACGGUCGGCuUUA---------------------------------------------------------- l=23 a=1 
---------GCUUGCAAGAUACGGUCGGCa------------------------------------------------------------- l=21 a=1 
-------AAGCUUGCAAGAUACGGUCGGCC------------------------------------------------------------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-101
